“UCSF ChimeraX : Tools for structure building and analysis” (2023), by Elaine C. Meng et al. Genetics and Biochemistry research paper. Original abstract below, unchanged. No free PDF was found.

UCSF ChimeraX : Tools for structure building and analysis

Elaine C. Meng, Thomas D. Goddard, Eric F. Pettersen et al. · September 29, 2023 · Genetics and Biochemistry

Abstract

Advances in computational tools for atomic model building are leading to accurate models of large molecular assemblies seen in electron microscopy, often at challenging resolutions of 3-4 Å. We describe new methods in the UCSF ChimeraX molecular modeling package that take advantage of machine-learning structure predictions, provide likelihood-based fitting in maps, and compute per-residue scores to identify modeling errors. Additional model-building tools assist analysis of mutations, post-translational modifications, and interactions with ligands. We present the latest ChimeraX model-building capabilities, including several community-developed extensions. ChimeraX is available free of charge for noncommercial use at https://www.rbvi.ucsf.edu/chimerax.

Source page DOI: 10.1002/pro.4792